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This sample represents a MAG derived from the metagenomic sample SAMN10093277

Identifiers
BioSample: SAMEA114581640; SRA: ERS16680770
Organism
Lachnospira eligens
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07160-L1_cleanbin_000012
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:16Z
ENA-LAST-UPDATE2023-11-07T00:47:16Z
External IdSAMEA114581640
INSDC center nameICMB
INSDC first public2023-11-07T00:47:16Z
INSDC last update2023-11-07T00:47:16Z
INSDC statuspublic
Submitter IdE07160-L1_cleanbin_000012
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score90.83333333
completeness softwareMAGSCoT
contamination score7.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093277
scientific_nameLachnospira eligens
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581640
ID:
38173280

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