U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN10093281

Identifiers
BioSample: SAMEA114581670; SRA: ERS16680800
Organism
Butyribacter intestini
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Butyribacter
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07160-L1_cleanbin_000043
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:20Z
ENA-LAST-UPDATE2023-11-07T00:47:20Z
External IdSAMEA114581670
INSDC center nameICMB
INSDC first public2023-11-07T00:47:20Z
INSDC last update2023-11-07T00:47:20Z
INSDC statuspublic
Submitter IdE07160-L1_cleanbin_000043
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score95.83333333
completeness softwareMAGSCoT
contamination score6.666666667
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093281
scientific_nameButyribacter intestini
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581670
ID:
38173310

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center