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This sample represents a MAG derived from the metagenomic sample SAMN10093281

Identifiers
BioSample: SAMEA114581672; SRA: ERS16680802
Organism
uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07160-L1_cleanbin_000045
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:21Z
ENA-LAST-UPDATE2023-11-07T00:47:21Z
External IdSAMEA114581672
INSDC center nameICMB
INSDC first public2023-11-07T00:47:21Z
INSDC last update2023-11-07T00:47:21Z
INSDC statuspublic
Submitter IdE07160-L1_cleanbin_000045
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score95.83333333
completeness softwareMAGSCoT
contamination score7.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093281
scientific_nameuncultured Lachnospiraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581672
ID:
38173312

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