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This sample represents a MAG derived from the metagenomic sample SAMN10093305

Identifiers
BioSample: SAMEA114581839; SRA: ERS16680969
Organism
Clostridiales bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; unclassified Eubacteriales
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07180-L1_cleanbin_000017
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:31Z
ENA-LAST-UPDATE2023-11-07T00:47:31Z
External IdSAMEA114581839
INSDC center nameICMB
INSDC first public2023-11-07T00:47:31Z
INSDC last update2023-11-07T00:47:31Z
INSDC statuspublic
Submitter IdE07180-L1_cleanbin_000017
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score95.83333333
completeness softwareMAGSCoT
contamination score1.666666667
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093305
scientific_nameClostridiales bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581839
ID:
38173479

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