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This sample represents a MAG derived from the metagenomic sample SAMN10093305

Identifiers
BioSample: SAMEA114581860; SRA: ERS16680990
Organism
Alistipes putredinis
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07180-L1_cleanbin_000041
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:10Z
ENA-LAST-UPDATE2023-11-07T00:47:10Z
External IdSAMEA114581860
INSDC center nameICMB
INSDC first public2023-11-07T00:47:10Z
INSDC last update2023-11-07T00:47:10Z
INSDC statuspublic
Submitter IdE07180-L1_cleanbin_000041
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score66.66666667
completeness softwareMAGSCoT
contamination score3.333333333
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093305
scientific_nameAlistipes putredinis
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581860
ID:
38173500

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