U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN10093313

Identifiers
BioSample: SAMEA114581924; SRA: ERS16681054
Organism
Staphylococcus sp. CAG:324
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; unclassified Staphylococcus
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07183-L1_cleanbin_000025
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:21Z
ENA-LAST-UPDATE2023-11-07T00:47:21Z
External IdSAMEA114581924
INSDC center nameICMB
INSDC first public2023-11-07T00:47:21Z
INSDC last update2023-11-07T00:47:21Z
INSDC statuspublic
Submitter IdE07183-L1_cleanbin_000025
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score80.83333333
completeness softwareMAGSCoT
contamination score4.166666667
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093313
scientific_nameStaphylococcus sp. CAG:324
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581924
ID:
38173564

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center