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This sample represents a MAG derived from the metagenomic sample SAMN10093317

Identifiers
BioSample: SAMEA114581975; SRA: ERS16681105
Organism
Parabacteroides merdae
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07187-L1_cleanbin_000008
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:08Z
ENA-LAST-UPDATE2023-11-07T00:47:08Z
External IdSAMEA114581975
INSDC center nameICMB
INSDC first public2023-11-07T00:47:08Z
INSDC last update2023-11-07T00:47:08Z
INSDC statuspublic
Submitter IdE07187-L1_cleanbin_000008
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score85
completeness softwareMAGSCoT
contamination score2.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093317
scientific_nameParabacteroides merdae
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581975
ID:
38173615

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