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This sample represents a MAG derived from the metagenomic sample SAMN10093329

Identifiers
BioSample: SAMEA114582061; SRA: ERS16681191
Organism
Brachyspira sp. CAG:484
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Brachyspirales; Brachyspiraceae; Brachyspira; unclassified Brachyspira (in: bacteria)
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07189-L1_cleanbin_000035
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:24Z
ENA-LAST-UPDATE2023-11-07T00:47:24Z
External IdSAMEA114582061
INSDC center nameICMB
INSDC first public2023-11-07T00:47:24Z
INSDC last update2023-11-07T00:47:24Z
INSDC statuspublic
Submitter IdE07189-L1_cleanbin_000035
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score99.16666667
completeness softwareMAGSCoT
contamination score0.833333333
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093329
scientific_nameBrachyspira sp. CAG:484
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114582061
ID:
38173701

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