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This sample represents a MAG derived from the metagenomic sample SAMN10093349

Identifiers
BioSample: SAMEA114582132; SRA: ERS16681262
Organism
Bacillota bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; unclassified Bacillota
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07192-L1_cleanbin_000019
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:15Z
ENA-LAST-UPDATE2023-11-07T00:47:15Z
External IdSAMEA114582132
INSDC center nameICMB
INSDC first public2023-11-07T00:47:15Z
INSDC last update2023-11-07T00:47:15Z
INSDC statuspublic
Submitter IdE07192-L1_cleanbin_000019
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score96.66666667
completeness softwareMAGSCoT
contamination score0.833333333
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093349
scientific_nameBacillota bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114582132
ID:
38173772

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