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This sample represents a MAG derived from the metagenomic sample SAMN17312077

Identifiers
BioSample: SAMEA114582200; SRA: ERS16681330
Organism
Oscillospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; unclassified Oscillospiraceae
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DRC)
sample nameE07193-L1_cleanbin_000049
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:29Z
ENA-LAST-UPDATE2023-11-07T00:47:29Z
External IdSAMEA114582200
INSDC center nameICMB
INSDC first public2023-11-07T00:47:29Z
INSDC last update2023-11-07T00:47:29Z
INSDC statuspublic
Submitter IdE07193-L1_cleanbin_000049
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score83.33
completeness softwareMAGSCoT
contamination score0.83
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312077
scientific_nameOscillospiraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114582200
ID:
38173840

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