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This sample represents a MAG derived from the metagenomic sample SAMN17312183

Identifiers
BioSample: SAMEA114582408; SRA: ERS16681557
Organism
Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; unclassified Lachnospiraceae
Attributes
broad-scale environmental contexthominid body
collection date2017
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan paniscus
sample nameG02609-L1_cleanbin_000001
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:24Z
ENA-LAST-UPDATE2023-11-07T00:47:24Z
External IdSAMEA114582408
INSDC center nameICMB
INSDC first public2023-11-07T00:47:24Z
INSDC last update2023-11-07T00:47:24Z
INSDC statuspublic
Submitter IdG02609-L1_cleanbin_000001
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score98.33
completeness softwareMAGSCoT
contamination score7.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan paniscus gut
sample derived fromSAMN17312183
scientific_nameLachnospiraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114582408
ID:
38174048

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