U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312191

Identifiers
BioSample: SAMEA114582469; SRA: ERS16681618
Organism
Succinivibrio sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Succinivibrio; unclassified Succinivibrio
Attributes
broad-scale environmental contexthominid body
collection date2017
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan paniscus
sample nameG02611-L1_cleanbin_000007
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:13Z
ENA-LAST-UPDATE2023-11-07T00:47:13Z
External IdSAMEA114582469
INSDC center nameICMB
INSDC first public2023-11-07T00:47:13Z
INSDC last update2023-11-07T00:47:13Z
INSDC statuspublic
Submitter IdG02611-L1_cleanbin_000007
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score97.5
completeness softwareMAGSCoT
contamination score1.67
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan paniscus gut
sample derived fromSAMN17312191
scientific_nameSuccinivibrio sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114582469
ID:
38174109

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center