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This sample represents a MAG derived from the metagenomic sample SAMN17312203

Identifiers
BioSample: SAMEA114582634; SRA: ERS16681783
Organism
Acidaminococcaceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales; Acidaminococcaceae; unclassified Acidaminococcaceae
Attributes
broad-scale environmental contexthominid body
collection date2004/2008
environmental mediumfeces
geographic locationUganda
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes schweinfurthii
sample nameG02616-L1_cleanbin_000006
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:23Z
ENA-LAST-UPDATE2023-11-07T00:47:23Z
External IdSAMEA114582634
INSDC center nameICMB
INSDC first public2023-11-07T00:47:23Z
INSDC last update2023-11-07T00:47:23Z
INSDC statuspublic
Submitter IdG02616-L1_cleanbin_000006
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score88.33
completeness softwareMAGSCoT
contamination score2.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312203
scientific_nameAcidaminococcaceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114582634
ID:
38174274

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