U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312194

Identifiers
BioSample: SAMEA114583234; SRA: ERS16682383
Organism
bacterium
cellular organisms; Bacteria; unclassified Bacteria
Attributes
broad-scale environmental contexthominid body
collection date2004/2008
environmental mediumfeces
geographic locationUganda
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes schweinfurthii
sample nameG02633-L1_cleanbin_000012
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:10Z
ENA-LAST-UPDATE2023-11-07T00:47:10Z
External IdSAMEA114583234
INSDC center nameICMB
INSDC first public2023-11-07T00:47:10Z
INSDC last update2023-11-07T00:47:10Z
INSDC statuspublic
Submitter IdG02633-L1_cleanbin_000012
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score90
completeness softwareMAGSCoT
contamination score0.83
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312194
scientific_namebacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114583234
ID:
38174874

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center