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This sample represents a MAG derived from the metagenomic sample SAMN17312210

Identifiers
BioSample: SAMEA114583517; SRA: ERS16682666
Organism
Bacteroidaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; unclassified Bacteroidaceae
Attributes
broad-scale environmental contexthominid body
collection date2016/2017
environmental mediumfeces
geographic locationGabon
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes troglodytes (GAB)
sample nameG02641-L1_cleanbin_000017
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:04Z
ENA-LAST-UPDATE2023-11-07T00:47:04Z
External IdSAMEA114583517
INSDC center nameICMB
INSDC first public2023-11-07T00:47:04Z
INSDC last update2023-11-07T00:47:04Z
INSDC statuspublic
Submitter IdG02641-L1_cleanbin_000017
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score87.5
completeness softwareMAGSCoT
contamination score3.33
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312210
scientific_nameBacteroidaceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114583517
ID:
38175157

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