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This sample represents a MAG derived from the metagenomic sample SAMN17312226

Identifiers
BioSample: SAMEA114584029; SRA: ERS16683178
Organism
Bacteroidaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; unclassified Bacteroidaceae
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameG02652-L1_cleanbin_000057
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:46:59Z
ENA-LAST-UPDATE2023-11-07T00:46:59Z
External IdSAMEA114584029
INSDC center nameICMB
INSDC first public2023-11-07T00:46:59Z
INSDC last update2023-11-07T00:46:59Z
INSDC statuspublic
Submitter IdG02652-L1_cleanbin_000057
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score85
completeness softwareMAGSCoT
contamination score4.17
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312226
scientific_nameBacteroidaceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114584029
ID:
38175669

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