U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312236

Identifiers
BioSample: SAMEA114584234; SRA: ERS16683383
Organism
Acidaminococcaceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales; Acidaminococcaceae; unclassified Acidaminococcaceae
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameSID5427-1_cleanbin_000002
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:16Z
ENA-LAST-UPDATE2023-11-07T00:47:16Z
External IdSAMEA114584234
INSDC center nameICMB
INSDC first public2023-11-07T00:47:16Z
INSDC last update2023-11-07T00:47:16Z
INSDC statuspublic
Submitter IdSID5427-1_cleanbin_000002
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score99.17
completeness softwareMAGSCoT
contamination score1.67
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312236
scientific_nameAcidaminococcaceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114584234
ID:
38175874

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center