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This sample represents a MAG derived from the metagenomic sample SAMN17312215

Identifiers
BioSample: SAMEA114584379; SRA: ERS16683528
Organism
Oscillospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; unclassified Oscillospiraceae
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameSID5429-1_cleanbin_000057
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:22Z
ENA-LAST-UPDATE2023-11-07T00:47:22Z
External IdSAMEA114584379
INSDC center nameICMB
INSDC first public2023-11-07T00:47:22Z
INSDC last update2023-11-07T00:47:22Z
INSDC statuspublic
Submitter IdSID5429-1_cleanbin_000057
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score97.5
completeness softwareMAGSCoT
contamination score3.33
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312215
scientific_nameOscillospiraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114584379
ID:
38176019

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