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This sample represents a MAG derived from the metagenomic sample SAMN17312256

Identifiers
BioSample: SAMEA114584693; SRA: ERS16683842
Organism
Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; unclassified Lachnospiraceae
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameSID5451-1_cleanbin_000032
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:12Z
ENA-LAST-UPDATE2023-11-07T00:47:12Z
External IdSAMEA114584693
INSDC center nameICMB
INSDC first public2023-11-07T00:47:12Z
INSDC last update2023-11-07T00:47:12Z
INSDC statuspublic
Submitter IdSID5451-1_cleanbin_000032
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score76.67
completeness softwareMAGSCoT
contamination score8.33
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312256
scientific_nameLachnospiraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114584693
ID:
38176333

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