U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312230

Identifiers
BioSample: SAMEA114585016; SRA: ERS16684165
Organism
Bacteroidaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; unclassified Bacteroidaceae
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameSID5466-1_cleanbin_000034
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:28Z
ENA-LAST-UPDATE2023-11-07T00:47:28Z
External IdSAMEA114585016
INSDC center nameICMB
INSDC first public2023-11-07T00:47:28Z
INSDC last update2023-11-07T00:47:28Z
INSDC statuspublic
Submitter IdSID5466-1_cleanbin_000034
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score92.5
completeness softwareMAGSCoT
contamination score5.83
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312230
scientific_nameBacteroidaceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585016
ID:
38176656

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center