U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312258

Identifiers
BioSample: SAMEA114585136; SRA: ERS16684285
Organism
Eggerthellaceae bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; unclassified Eggerthellaceae
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameSRR8978232_cleanbin_000007
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:14Z
ENA-LAST-UPDATE2023-11-07T00:47:14Z
External IdSAMEA114585136
INSDC center nameICMB
INSDC first public2023-11-07T00:47:14Z
INSDC last update2023-11-07T00:47:14Z
INSDC statuspublic
Submitter IdSRR8978232_cleanbin_000007
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score95
completeness softwareMAGSCoT
contamination score0.83
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312258
scientific_nameEggerthellaceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585136
ID:
38176776

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center