U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312252

Identifiers
BioSample: SAMEA114585180; SRA: ERS16684329
Organism
Acutalibacteraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Acutalibacteraceae; unclassified Acutalibacteraceae
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameSRR8978300_cleanbin_000003
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:20Z
ENA-LAST-UPDATE2023-11-07T00:47:20Z
External IdSAMEA114585180
INSDC center nameICMB
INSDC first public2023-11-07T00:47:20Z
INSDC last update2023-11-07T00:47:20Z
INSDC statuspublic
Submitter IdSRR8978300_cleanbin_000003
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score98.33
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312252
scientific_nameAcutalibacteraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585180
ID:
38176820

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center