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This sample represents a MAG derived from the metagenomic sample SAMN17312249

Identifiers
BioSample: SAMEA114585258; SRA: ERS16684407
Organism
Paludibacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; unclassified Paludibacteraceae
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameSRR8978354_cleanbin_000005
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:20Z
ENA-LAST-UPDATE2023-11-07T00:47:20Z
External IdSAMEA114585258
INSDC center nameICMB
INSDC first public2023-11-07T00:47:20Z
INSDC last update2023-11-07T00:47:20Z
INSDC statuspublic
Submitter IdSRR8978354_cleanbin_000005
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score80
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312249
scientific_namePaludibacteraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585258
ID:
38176898

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