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This sample represents a MAG derived from the metagenomic sample SAMN11515230

Identifiers
BioSample: SAMEA114585616; SRA: ERS16684765
Organism
Flexilinea sp.
cellular organisms; Bacteria; Bacillati; Chloroflexota; Anaerolineae; Anaerolineales; Anaerolineaceae; Flexilinea; unclassified Flexilinea
Attributes
broad-scale environmental contexthominid body
collection date2013
environmental mediumfeces
geographic locationRepublic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Gorilla gorilla gorilla (CG)
sample nameH07604-L1_cleanbin_000010
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:02Z
ENA-LAST-UPDATE2023-11-07T00:47:02Z
External IdSAMEA114585616
INSDC center nameICMB
INSDC first public2023-11-07T00:47:02Z
INSDC last update2023-11-07T00:47:02Z
INSDC statuspublic
Submitter IdH07604-L1_cleanbin_000010
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score80.83333333
completeness softwareMAGSCoT
contamination score0.833333333
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceGorilla gorilla gut
sample derived fromSAMN11515230
scientific_nameFlexilinea sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585616
ID:
38177256

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