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This sample represents a MAG derived from the metagenomic sample SAMN11515215

Identifiers
BioSample: SAMEA114585656; SRA: ERS16684805
Organism
Treponemataceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; unclassified Treponemataceae
Attributes
broad-scale environmental contexthominid body
collection date2013
environmental mediumfeces
geographic locationRepublic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Gorilla gorilla gorilla (CG)
sample nameH07605-L1_cleanbin_000029
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:06Z
ENA-LAST-UPDATE2023-11-07T00:47:06Z
External IdSAMEA114585656
INSDC center nameICMB
INSDC first public2023-11-07T00:47:06Z
INSDC last update2023-11-07T00:47:06Z
INSDC statuspublic
Submitter IdH07605-L1_cleanbin_000029
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score85.83333333
completeness softwareMAGSCoT
contamination score3.333333333
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceGorilla gorilla gut
sample derived fromSAMN11515215
scientific_nameTreponemataceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585656
ID:
38177296

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