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This sample represents a MAG derived from the metagenomic sample SAMN17312075

Identifiers
BioSample: SAMEA114585759; SRA: ERS16684908
Organism
Bacteroides fragilis
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DRC)
sample nameH07607-L1_cleanbin_000022
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:04Z
ENA-LAST-UPDATE2023-11-07T00:47:04Z
External IdSAMEA114585759
INSDC center nameICMB
INSDC first public2023-11-07T00:47:04Z
INSDC last update2023-11-07T00:47:04Z
INSDC statuspublic
Submitter IdH07607-L1_cleanbin_000022
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score69.17
completeness softwareMAGSCoT
contamination score2.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312075
scientific_nameBacteroides fragilis
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585759
ID:
38177399

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