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This sample represents a MAG derived from the metagenomic sample SAMN17312073

Identifiers
BioSample: SAMEA114585779; SRA: ERS16684928
Organism
uncultured Phascolarctobacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales; Acidaminococcaceae; Phascolarctobacterium; environmental samples
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DRC)
sample nameH07607-L1_cleanbin_000045
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:06Z
ENA-LAST-UPDATE2023-11-07T00:47:06Z
External IdSAMEA114585779
INSDC center nameICMB
INSDC first public2023-11-07T00:47:06Z
INSDC last update2023-11-07T00:47:06Z
INSDC statuspublic
Submitter IdH07607-L1_cleanbin_000045
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score68.33
completeness softwareMAGSCoT
contamination score4.17
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312073
scientific_nameuncultured Phascolarctobacterium sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585779
ID:
38177419

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