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This sample represents a MAG derived from the metagenomic sample SAMN17312151

Identifiers
BioSample: SAMEA114585928; SRA: ERS16685077
Organism
Lawsonibacter hominis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Lawsonibacter
Attributes
broad-scale environmental contexthominid body
collection date2011/2014
environmental mediumfeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (GER)
sample nameH07615-L1_cleanbin_000045
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:46:57Z
ENA-LAST-UPDATE2023-11-07T00:46:57Z
External IdSAMEA114585928
INSDC center nameICMB
INSDC first public2023-11-07T00:46:57Z
INSDC last update2023-11-07T00:46:57Z
INSDC statuspublic
Submitter IdH07615-L1_cleanbin_000045
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score90
completeness softwareMAGSCoT
contamination score2.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312151
scientific_nameLawsonibacter hominis
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114585928
ID:
38177568

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