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This sample represents a MAG derived from the metagenomic sample SAMN17312067

Identifiers
BioSample: SAMEA114586264; SRA: ERS16685413
Organism
Bacteroides stercoris
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (CIV)
sample nameH07621-L1_cleanbin_000015
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:30Z
ENA-LAST-UPDATE2023-11-07T00:47:30Z
External IdSAMEA114586264
INSDC center nameICMB
INSDC first public2023-11-07T00:47:30Z
INSDC last update2023-11-07T00:47:30Z
INSDC statuspublic
Submitter IdH07621-L1_cleanbin_000015
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score99.17
completeness softwareMAGSCoT
contamination score7.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312067
scientific_nameBacteroides stercoris
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586264
ID:
38177903

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