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This sample represents a MAG derived from the metagenomic sample SAMN17312180

Identifiers
BioSample: SAMEA114586290; SRA: ERS16685439
Organism
Paludibacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; unclassified Paludibacteraceae
Attributes
broad-scale environmental contexthominid body
collection date2015/2016
environmental mediumfeces
geographic locationGabon
investigation typemetagenome-assembled genome
isolation sourceFeces of Gorilla gorilla gorilla (GAB)
sample nameH07622-L1_cleanbin_000026
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:15Z
ENA-LAST-UPDATE2023-11-07T00:47:15Z
External IdSAMEA114586290
INSDC center nameICMB
INSDC first public2023-11-07T00:47:15Z
INSDC last update2023-11-07T00:47:15Z
INSDC statuspublic
Submitter IdH07622-L1_cleanbin_000026
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score95.83
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceGorilla gorilla gut
sample derived fromSAMN17312180
scientific_namePaludibacteraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586290
ID:
38177929

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