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This sample represents a MAG derived from the metagenomic sample SAMN17312174

Identifiers
BioSample: SAMEA114586376; SRA: ERS16685525
Organism
Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; unclassified Lachnospiraceae
Attributes
broad-scale environmental contexthominid body
collection date2015/2016
environmental mediumfeces
geographic locationGabon
investigation typemetagenome-assembled genome
isolation sourceFeces of Gorilla gorilla gorilla (GAB)
sample nameH07625-L1_cleanbin_000003
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:31Z
ENA-LAST-UPDATE2023-11-07T00:47:31Z
External IdSAMEA114586376
INSDC center nameICMB
INSDC first public2023-11-07T00:47:31Z
INSDC last update2023-11-07T00:47:31Z
INSDC statuspublic
Submitter IdH07625-L1_cleanbin_000003
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score99.17
completeness softwareMAGSCoT
contamination score4.17
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceGorilla gorilla gut
sample derived fromSAMN17312174
scientific_nameLachnospiraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586376
ID:
38178015

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