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This sample represents a MAG derived from the metagenomic sample SAMN17312169

Identifiers
BioSample: SAMEA114586524; SRA: ERS16685673
Organism
bacterium
cellular organisms; Bacteria; unclassified Bacteria
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationUganda
investigation typemetagenome-assembled genome
isolation sourceFeces of Gorilla beringei beringei
sample nameH07627-L1_cleanbin_000055
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:18Z
ENA-LAST-UPDATE2023-11-07T00:47:18Z
External IdSAMEA114586524
INSDC center nameICMB
INSDC first public2023-11-07T00:47:18Z
INSDC last update2023-11-07T00:47:18Z
INSDC statuspublic
Submitter IdH07627-L1_cleanbin_000055
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score70.83
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceGorilla beringei gut
sample derived fromSAMN17312169
scientific_namebacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586524
ID:
38178163

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