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This sample represents a MAG derived from the metagenomic sample SAMN17312058

Identifiers
BioSample: SAMEA114586541; SRA: ERS16685690
Organism
Acidaminococcaceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales; Acidaminococcaceae; unclassified Acidaminococcaceae
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (CIV)
sample nameH07628-L1_cleanbin_000003
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:22Z
ENA-LAST-UPDATE2023-11-07T00:47:22Z
External IdSAMEA114586541
INSDC center nameICMB
INSDC first public2023-11-07T00:47:22Z
INSDC last update2023-11-07T00:47:22Z
INSDC statuspublic
Submitter IdH07628-L1_cleanbin_000003
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score88.33
completeness softwareMAGSCoT
contamination score2.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312058
scientific_nameAcidaminococcaceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586541
ID:
38178180

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