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This sample represents a MAG derived from the metagenomic sample SAMN17312164

Identifiers
BioSample: SAMEA114586795; SRA: ERS16685944
Organism
Sphaerochaetaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Sphaerochaetaceae; unclassified Sphaerochaetaceae
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationUganda
investigation typemetagenome-assembled genome
isolation sourceFeces of Gorilla beringei beringei
sample nameH07634-L1_cleanbin_000073
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:30Z
ENA-LAST-UPDATE2023-11-07T00:47:30Z
External IdSAMEA114586795
INSDC center nameICMB
INSDC first public2023-11-07T00:47:30Z
INSDC last update2023-11-07T00:47:30Z
INSDC statuspublic
Submitter IdH07634-L1_cleanbin_000073
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score70.83
completeness softwareMAGSCoT
contamination score3.33
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceGorilla beringei gut
sample derived fromSAMN17312164
scientific_nameSphaerochaetaceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586795
ID:
38178434

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