U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312240

Identifiers
BioSample: SAMEA114586893; SRA: ERS16686042
Organism
Anaerovibrio sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Anaerovibrio; unclassified Anaerovibrio
Attributes
broad-scale environmental contexthominid body
collection date2001/2014
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan troglodytes verus
sample nameH07636-L1_cleanbin_000050
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:30Z
ENA-LAST-UPDATE2023-11-07T00:47:30Z
External IdSAMEA114586893
INSDC center nameICMB
INSDC first public2023-11-07T00:47:30Z
INSDC last update2023-11-07T00:47:30Z
INSDC statuspublic
Submitter IdH07636-L1_cleanbin_000050
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score96.67
completeness softwareMAGSCoT
contamination score4.17
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan troglodytes gut
sample derived fromSAMN17312240
scientific_nameAnaerovibrio sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586893
ID:
38178532

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center