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This sample represents a MAG derived from the metagenomic sample SAMN17312067

Identifiers
BioSample: SAMEA114586980; SRA: ERS16686129
Organism
Ruminococcus bovis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (CIV)
sample nameH07638-L1_cleanbin_000011
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:27Z
ENA-LAST-UPDATE2023-11-07T00:47:27Z
External IdSAMEA114586980
INSDC center nameICMB
INSDC first public2023-11-07T00:47:27Z
INSDC last update2023-11-07T00:47:27Z
INSDC statuspublic
Submitter IdH07638-L1_cleanbin_000011
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score87.5
completeness softwareMAGSCoT
contamination score1.67
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312067
scientific_nameRuminococcus bovis
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114586980
ID:
38178619

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