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This sample represents a MAG derived from the metagenomic sample SAMN10093185

Identifiers
BioSample: SAMEA114587103; SRA: ERS16686252
Organism
Clostridium sp. CAG:217
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; unclassified Clostridium
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameH07641-L1_cleanbin_000017
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:46:57Z
ENA-LAST-UPDATE2023-11-07T00:46:57Z
External IdSAMEA114587103
INSDC center nameICMB
INSDC first public2023-11-07T00:46:57Z
INSDC last update2023-11-07T00:46:57Z
INSDC statuspublic
Submitter IdH07641-L1_cleanbin_000017
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score83.33333333
completeness softwareMAGSCoT
contamination score1.666666667
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093185
scientific_nameClostridium sp. CAG:217
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587103
ID:
38178742

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