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This sample represents a MAG derived from the metagenomic sample SAMN10093193

Identifiers
BioSample: SAMEA114587137; SRA: ERS16686286
Organism
Clostridium sp. CAG:492
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; unclassified Clostridium
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameH07642-L1_cleanbin_000011
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:00Z
ENA-LAST-UPDATE2023-11-07T00:47:00Z
External IdSAMEA114587137
INSDC center nameICMB
INSDC first public2023-11-07T00:47:00Z
INSDC last update2023-11-07T00:47:00Z
INSDC statuspublic
Submitter IdH07642-L1_cleanbin_000011
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score95.83333333
completeness softwareMAGSCoT
contamination score9.166666667
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093193
scientific_nameClostridium sp. CAG:492
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587137
ID:
38178776

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