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This sample represents a MAG derived from the metagenomic sample SAMN10281458

Identifiers
BioSample: SAMEA114587171; SRA: ERS16686320
Organism
[Ruminococcus] torques
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameH07643-L1_cleanbin_000018
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:03Z
ENA-LAST-UPDATE2023-11-07T00:47:03Z
External IdSAMEA114587171
INSDC center nameICMB
INSDC first public2023-11-07T00:47:03Z
INSDC last update2023-11-07T00:47:03Z
INSDC statuspublic
Submitter IdH07643-L1_cleanbin_000018
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score98.33333333
completeness softwareMAGSCoT
contamination score3.333333333
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10281458
scientific_name[Ruminococcus] torques
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587171
ID:
38178810

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