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This sample represents a MAG derived from the metagenomic sample SAMN17312165

Identifiers
BioSample: SAMEA114587295; SRA: ERS16686444
Organism
Candidatus Methanomethylophilaceae archaeon
cellular organisms; Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata; Methanomassiliicoccales; Methanomethylophilaceae; unclassified Methanomethylophilaceae
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationUganda
investigation typemetagenome-assembled genome
isolation sourceFeces of Gorilla beringei beringei
sample nameH07646-L1_cleanbin_000020
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:01Z
ENA-LAST-UPDATE2023-11-07T00:47:01Z
External IdSAMEA114587295
INSDC center nameICMB
INSDC first public2023-11-07T00:47:01Z
INSDC last update2023-11-07T00:47:01Z
INSDC statuspublic
Submitter IdH07646-L1_cleanbin_000020
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score90.57
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceGorilla beringei gut
sample derived fromSAMN17312165
scientific_nameCandidatus Methanomethylophilaceae archaeon
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587295
ID:
38178934

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