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This sample represents a MAG derived from the metagenomic sample SAMN17312060

Identifiers
BioSample: SAMEA114587619; SRA: ERS16686768
Organism
bacterium
cellular organisms; Bacteria; unclassified Bacteria
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DRC)
sample nameH07653-L1_cleanbin_000002
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:46:57Z
ENA-LAST-UPDATE2023-11-07T00:46:57Z
External IdSAMEA114587619
INSDC center nameICMB
INSDC first public2023-11-07T00:46:57Z
INSDC last update2023-11-07T00:46:57Z
INSDC statuspublic
Submitter IdH07653-L1_cleanbin_000002
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score67.5
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312060
scientific_namebacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587619
ID:
38179258

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