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This sample represents a MAG derived from the metagenomic sample SAMN17312079

Identifiers
BioSample: SAMEA114587658; SRA: ERS16686807
Organism
uncultured Oscillospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; environmental samples
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DRC)
sample nameH07653-L1_cleanbin_000045
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:01Z
ENA-LAST-UPDATE2023-11-07T00:47:01Z
External IdSAMEA114587658
INSDC center nameICMB
INSDC first public2023-11-07T00:47:01Z
INSDC last update2023-11-07T00:47:01Z
INSDC statuspublic
Submitter IdH07653-L1_cleanbin_000045
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score81.67
completeness softwareMAGSCoT
contamination score3.33
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312079
scientific_nameuncultured Oscillospiraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587658
ID:
38179297

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