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This sample represents a MAG derived from the metagenomic sample SAMN17312193

Identifiers
BioSample: SAMEA114587805; SRA: ERS16686954
Organism
Paludibacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; unclassified Paludibacteraceae
Attributes
broad-scale environmental contexthominid body
collection date2017
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan paniscus
sample nameH07656-L1_cleanbin_000002
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:03Z
ENA-LAST-UPDATE2023-11-07T00:47:03Z
External IdSAMEA114587805
INSDC center nameICMB
INSDC first public2023-11-07T00:47:03Z
INSDC last update2023-11-07T00:47:03Z
INSDC statuspublic
Submitter IdH07656-L1_cleanbin_000002
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score91.67
completeness softwareMAGSCoT
contamination score2.5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan paniscus gut
sample derived fromSAMN17312193
scientific_namePaludibacteraceae bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587805
ID:
38179444

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