U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312072

Identifiers
BioSample: SAMEA114587857; SRA: ERS16687006
Organism
bacterium
cellular organisms; Bacteria; unclassified Bacteria
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DRC)
sample nameH07659-L1_cleanbin_000007
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:08Z
ENA-LAST-UPDATE2023-11-07T00:47:08Z
External IdSAMEA114587857
INSDC center nameICMB
INSDC first public2023-11-07T00:47:08Z
INSDC last update2023-11-07T00:47:08Z
INSDC statuspublic
Submitter IdH07659-L1_cleanbin_000007
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score52.5
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312072
scientific_namebacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587857
ID:
38179496

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center