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This sample represents a MAG derived from the metagenomic sample SAMN17312140

Identifiers
BioSample: SAMEA114587904; SRA: ERS16687053
Organism
uncultured Roseburia sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia; environmental samples
Attributes
broad-scale environmental contexthominid body
collection date2011/2014
environmental mediumfeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (GER)
sample nameH07659-L1_cleanbin_000062
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:00Z
ENA-LAST-UPDATE2023-11-07T00:47:00Z
External IdSAMEA114587904
INSDC center nameICMB
INSDC first public2023-11-07T00:47:00Z
INSDC last update2023-11-07T00:47:00Z
INSDC statuspublic
Submitter IdH07659-L1_cleanbin_000062
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score85
completeness softwareMAGSCoT
contamination score6.67
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312140
scientific_nameuncultured Roseburia sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587904
ID:
38179543

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