U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312159

Identifiers
BioSample: SAMEA114587971; SRA: ERS16687120
Organism
uncultured Prevotella sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples
Attributes
broad-scale environmental contexthominid body
collection date2011/2014
environmental mediumfeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (GER)
sample nameH07663-L1_cleanbin_000009
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:28Z
ENA-LAST-UPDATE2023-11-07T00:47:28Z
External IdSAMEA114587971
INSDC center nameICMB
INSDC first public2023-11-07T00:47:28Z
INSDC last update2023-11-07T00:47:28Z
INSDC statuspublic
Submitter IdH07663-L1_cleanbin_000009
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score98.33
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312159
scientific_nameuncultured Prevotella sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587971
ID:
38179610

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center