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This sample represents a MAG derived from the metagenomic sample SAMN17312160

Identifiers
BioSample: SAMEA114588017; SRA: ERS16687166
Organism
Ruminococcus bromii
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Attributes
broad-scale environmental contexthominid body
collection date2011/2014
environmental mediumfeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (GER)
sample nameH07663-L1_cleanbin_000062
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:13Z
ENA-LAST-UPDATE2023-11-07T00:47:13Z
External IdSAMEA114588017
INSDC center nameICMB
INSDC first public2023-11-07T00:47:13Z
INSDC last update2023-11-07T00:47:13Z
INSDC statuspublic
Submitter IdH07663-L1_cleanbin_000062
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score98.33
completeness softwareMAGSCoT
contamination score1.67
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312160
scientific_nameRuminococcus bromii
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114588017
ID:
38179656

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