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This sample represents a MAG derived from the metagenomic sample SAMN17312184

Identifiers
BioSample: SAMEA114588483; SRA: ERS16687632
Organism
Lachnospira sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; unclassified Lachnospira
Attributes
broad-scale environmental contexthominid body
collection date2017
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan paniscus
sample nameH07677-L1_cleanbin_000020
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:32Z
ENA-LAST-UPDATE2023-11-07T00:47:32Z
External IdSAMEA114588483
INSDC center nameICMB
INSDC first public2023-11-07T00:47:32Z
INSDC last update2023-11-07T00:47:32Z
INSDC statuspublic
Submitter IdH07677-L1_cleanbin_000020
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score91.67
completeness softwareMAGSCoT
contamination score5.83
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan paniscus gut
sample derived fromSAMN17312184
scientific_nameLachnospira sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114588483
ID:
38180122

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