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This sample represents a MAG derived from the metagenomic sample SAMN17312144

Identifiers
BioSample: SAMEA114588568; SRA: ERS16687717
Organism
Parabacteroides merdae
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides
Attributes
broad-scale environmental contexthominid body
collection date2011/2014
environmental mediumfeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (GER)
sample nameH07681-L1_cleanbin_000035
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:24Z
ENA-LAST-UPDATE2023-11-07T00:47:24Z
External IdSAMEA114588568
INSDC center nameICMB
INSDC first public2023-11-07T00:47:24Z
INSDC last update2023-11-07T00:47:24Z
INSDC statuspublic
Submitter IdH07681-L1_cleanbin_000035
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score78.33
completeness softwareMAGSCoT
contamination score5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312144
scientific_nameParabacteroides merdae
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114588568
ID:
38180207

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