U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN17312145

Identifiers
BioSample: SAMEA114588599; SRA: ERS16687748
Organism
uncultured Eubacteriales bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; environmental samples
Attributes
broad-scale environmental contexthominid body
collection date2011/2014
environmental mediumfeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (GER)
sample nameH07681-L1_cleanbin_000070
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:30Z
ENA-LAST-UPDATE2023-11-07T00:47:30Z
External IdSAMEA114588599
INSDC center nameICMB
INSDC first public2023-11-07T00:47:30Z
INSDC last update2023-11-07T00:47:30Z
INSDC statuspublic
Submitter IdH07681-L1_cleanbin_000070
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score95.83
completeness softwareMAGSCoT
contamination score0.83
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312145
scientific_nameuncultured Eubacteriales bacterium
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114588599
ID:
38180238

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center